Class 2 - Bayesian Inference

@ChelseaParlett

Zoom

Zoom: 12:00pm - 2:45pm, January 24, 2022

Required Readings

Chapter 1: The Golem of Prague Data

Chapter 2: The Garden of Forking Data

Chapter 3: Sampling the Imaginary

Lectures

Lecture 1


Link to pdf


Lecture 2


Link to pdf


Comprehension questions

What is Bayesian data analysis? How does it differ in its definition of uncertainty from Frequentist interpretations?

  • An approach to count all the ways data can happen according to assumptions.

  • Bayesian data analysis uses probabilities to describe uncertainty. Importantly, in Bayesian data analysis probabilities describe degrees of belief. In contrast, a frequentist interpretation of probabilities would be as the frequencies of events in very large samples.

  • This leads to frequentist uncertainty being premised on imaginary resampling of data—if we were to repeat the measurement many many times, we would end up collecting a list of values that will have some pattern to it. It means also that parameters and models cannot have probability distributions, only measurements can.

Classical (Frequentist) statistical tests were originally developed for what purposes?

  • They were originally developed (largely by Ronald Fisher) in the early 20th century for agricultural applications. They typically were for randomized experiments with large effects, in which measurement issues had been solved.

  • Such statistical tests produce inferences, not decisions.

What is the core problem with null hypothesis testing?

  • Null hypotheses are not unique. Hypotheses do not imply unique models, and models do not imply unique hypotheses.

  • Models are not hypotheses; they are neither true or false. Models are “golems” that do as they are told. Ideally should compare performance across models (model comparison).

  • Popper: test (attempt to falsify) research hypothesis. Use theory, make a falsifiable prediction, and test that; not that nothing happened (aka null hypothesis).

Deliverables

Due before class: Monday, January 24 at 11:59am

Class Feedback

Lesson Quiz

Project Check-in 1

Presentations on February 14, Project Check In 1

Due by next class (Jan 31): Email or DM Ryan the article you will be presenting on.

Lab for class 2

Lab class 2 code

Problem Set 1

Due by next class: Monday, January 31 at 11:59am

Problem Set / Canvas Link

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